Microscopy, pathology & medical image viewer Windows & macOS

YOUR IMAGES. ONE POWERFUL VIEWER.

From MRI and CT scans to whole-slide pathology and advanced microscopy. Open, explore and measure your images in one app, with analysis tools for microscopy built in. No vendor software, no converting: 39 formats.

Watch the 90-second tour

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Free download · free sample library, every tool

  • Code-signed installer
  • SlideScope 1.23.0 2026-11-06
  • For research, education and review — not for diagnosis
  • Read trust & data handling

Rated 4.8 out of 5 from 5 reviews

Before you subscribe

See your own files open first.

SlideScope reads your files right on your computer, with nothing uploaded, and shows you what opens and what you can do with each one.

  1. Download SlideScope free

    For Windows and macOS. Explore the sample library with every tool.

  2. Open your files or folders

    SlideScope checks each one automatically: a preview, its channels, Z-stacks, scenes and pixel size, and the tools that apply.

  3. Subscribe, and they open

    Your files open in full, with every tool, a few clicks after the check.

If a file does not open yet, the check says so plainly, and you can tell our support team about it.

One viewer, many kinds of images

For researchers, pathologists, students and patients.

Researchers & scientists

Confocal, fluorescence and live-cell files from Zeiss, Nikon, Leica and more: every channel in colour, Z-stacks, time-lapse and cell counting.

Microscopy formats

Pathologists & labs

Whole slides from Aperio, Hamamatsu, 3DHISTECH and Leica: zoom smoothly, measure in µm, annotate and compare slides side by side.

Digital pathology viewer

Students & teachers

Learn on real slides. The free sample library opens with every tool, no subscription needed.

Learning resources

Patients & families

Got an MRI, CT or X-ray disc from the hospital? Open it and scroll through your scan on your own computer. For viewing, not diagnosis.

Open a scan disc
SlideScope 1.23.0

Open, review, measure, and annotate microscopy files with ease

SlideScope is a desktop digital pathology and microscopy viewer for Windows and macOS. Researchers, educators, laboratories, and pathology teams use it to open whole slide images from Aperio, Hamamatsu, 3DHISTECH, Leica, and Ventana scanners (SVS, NDPI, MRXS, SCN, BIF, QPTIFF) alongside CZI, ND2, LIF, IMS, DICOM, and TIFF microscopy files in one focused workspace.

Use calibrated measurements, precise annotations, shared slides, side-by-side comparison, and AI-assisted analysis without the cost or complexity of a heavy image-management platform. Whole slide imaging, histology, and virtual microscopy review all run from the same window, on your own machine.

Explore the built-in sample library free, with every tool. Opening your own images needs a subscription.

  • Up to 2 devices
  • Desktop + cloud
Runs on your machine
  • Open files & links
  • Measure & annotate
  • On-device AI quantification

Opening, viewing, measurement and quantification all happen locally. No upload required.

Cloud AI is optional
  • Share slide packages
  • AI Analysis

AI Analysis sends only a compressed view of the current frame, and asks before the first time.

Features

Your slides. Your tools. One focused workspace.

Open, navigate, measure, and annotate. The everyday work of microscopy, together in a desktop app.

Move through large slides.

Navigate between the overview and areas of interest. Keep your place as you explore the detail.

Bring your formats together.

Review images from different microscopes and scanners in one consistent workspace.

Keep your tools close.

Inspect channels, make calibrated measurements, annotate, and compare related slides.

  • Windows 10/11 and macOS builds
  • SSL.com code-signed Windows downloads
  • Account-linked saved slide notes
  • Brightness, contrast, and gamma controls with per-channel colours
  • Export the current view or a selected region as an image
  • Localized release notes and product documentation
  • Slide overview navigator and file details without opening a slide
  • On-device segmentation and object counting with folder batch runs
  • Slide quality check for blur, pen marks, clipped brightness and missing tiles, one slide or a whole folder
  • Safe Share: links and safe copies without the slide label, overview photo or identifying details
  • Serial-section alignment in Compare, with linked side-by-side views
  • Publication figures with a calibrated scale bar, plus Methods text and legend written from the file
  • Share links that carry your notes, regions and measurements, read-only for colleagues
  • Folder dataset tools: metadata CSV, contact sheet, HTML report and calibrated OME-TIFF export
  • XY Overview of stage positions, plate wells and every scene of a multi-scene CZI
  • Set the pixel size, rotate and flip the view, and go Back and Forward between slides
Quick walkthrough

Watch demo

Supported file formats

Different formats. A familiar workspace.

Start with the files you use. Check support and important limitations before bringing them into your workflow.

  • CZI
  • ND2
  • SVS
  • NDPI
  • MRXS
  • QPTIFF
  • SCN
  • BIF
  • VMS
  • VMU
  • SVSLIDE
  • LIF
  • IMS
  • AVS
  • DCM
  • TIF
  • VSI
  • OIB
  • OIR
  • ZVI
  • LSM
  • LOF
  • XLEF
  • DV
  • STK
  • ND
  • NDPIS
  • OME-Zarr
  • PNG
  • JPG
  • JP2
  • BMP
  • GIF
  • WebP
  • iSyntax
  • KFB
  • ICS / IDS
  • DM3 / DM4
  • SIS
  • CZI for Zeiss microscopy images
  • ND2 for Nikon time-lapse, Z-stack, and multidimensional microscopy files
  • SVS for Aperio whole-slide pathology images
  • NDPI, VMS, VMU, MRXS, SCN, BIF, SVSLIDE, QPTIFF, and AVS scanner slides from Hamamatsu, 3DHISTECH, Leica, Ventana, Aperio, Vectra, and Agilent ARGOS
  • DICOM for research and education medical imaging review
  • TIFF and microscopy TIFF export workflows
  • LIF for Leica confocal and widefield microscopy files
  • IMS for Imaris/Bitplane multi-channel imaging files
  • Olympus/Evident VSI, OIB/OIF and OIR, Zeiss ZVI and LSM, Leica LOF and XLEF, DeltaVision DV, MetaMorph STK and ND, Hamamatsu NDPIS and OME-Zarr (including HCS plates), with the instrument settings each file records
  • PNG, JPEG, JPEG 2000, BMP, GIF and WebP images
  • Philips iSyntax and KFBio KFB whole-slide scans, ICS/IDS images from SVI Huygens and DIPlib, Gatan DM3/DM4 electron micrographs and Olympus SIS images, each with its scale and metadata

Header images: IMS: Dave Mason, CC BY 4.0 CZI: Stephan Wagner-Conrad (Zenodo 10577186), CC BY 4.0 ND2: Aryeh Weiss, CC BY 4.0 ND2: hfriedman97 (Zenodo 10277961), CC BY 4.0 LIF: Nicolas Chiaruttini, CC BY 4.0 DICOM: NCI Imaging Data Commons, CC BY 4.0 NDPI, TIFF, SVS: OpenSlide test data, CC0

Rated 4.8 out of 5 from 5 reviews

★★★★★
SlideScope made it much easier for our lab to open CZI and ND2 files without jumping between different tools. The interface is simple, the zoom and navigation feel smooth, and the AI Analysis panel is surprisingly helpful when we need a quick explanation of what we are looking at.
Daniel R.
★★★★★
Very practical viewer for day-to-day microscopy work. I mainly use it to review large SVS slides, check metadata, and export views for collaboration. It feels lightweight, focused, and much faster to explain to new team members than the heavier software we used before.
Maya L.
★★★★★
What I like most is that SlideScope does not try to be complicated. I can drag in a microscopy file, move through slices, measure areas, and get a clear AI-generated description when I need context. It saves time, especially when reviewing images with students.
Jonathan K.
★★★★★
Opening microscopy files from shared links is a big advantage for our workflow. We often receive files from collaborators, and SlideScope makes it easy to inspect them quickly without a long setup process. The support inside the app also gives the product a very personal feeling.
Emily S.
★★★★★
For the price, SlideScope gives us exactly what we need: CZI, ND2, SVS, DICOM, and TIFF support, smooth viewing, measurement tools, and clear AI readouts. It is especially useful for research and teaching where we need quick, reliable image review without a complex learning curve.
Alex M.

What to know before you trust it with your slides

Local file review

SlideScope opens supported microscopy files from the computer. Opening a shared link is optional, and linked files can be cached locally for review.

Accounts and saved notes

Accounts manage subscription access and can store slide notes. Do not place patient-identifying or restricted research information in saved notes unless institutional policy permits it.

AI Analysis

AI Analysis is optional and sends the visible frame to the hosted analysis service. Do not use it with data that your organisation does not allow you to send to that service.

Clinical-use boundary

SlideScope is intended for research, education, and review. It is not presented as a turnkey clinical diagnostic platform; diagnostic use requires institutional validation and regulatory review.

Read trust & data handling

Fast answers, real people behind them

Your work matters to us

If something doesn't work as expected, tell us. We personally review every report: our AI support assistant answers right away, 24/7, and a real person on our team steps in whenever it matters. Helpful reports can also earn rewards toward your SlideScope subscription.

Contact support
Resource library

Find the right microscopy guide

Start with your file format, workflow, or current software. Each guide gives you a focused path to the details you need.

Digital pathology

Whole slide imaging and pathology

File viewers

Open a file format

Microscope formats

Open confocal, widefield and plate files

Use cases

Explore a workflow

Software comparisons

Compare viewer options

Independent comparison guide

ImageJ alternatives for viewing microscopy files

Evaluate SlideScope for viewing mixed microscopy formats, measuring and routine local quantification. Use Fiji/ImageJ for plugins and macros, QuPath for whole-slide analysis pipelines, and vendor software for microscope acquisition.

Alternatives

FAQ

What is SlideScope?

SlideScope is a desktop microscopy and medical imaging viewer for Windows and macOS. It supports CZI, ND2, SVS, DICOM, and TIFF review workflows.

Who is it for?

It is built for research labs, microscopy core facilities, educators, students, and pathology review teams that need practical file review, annotations, measurements, metadata, and export.

How does AI Analysis work?

AI Analysis reads the visible frame and returns a formatted expert-style explanation with language selection, copy/share controls, and text zoom. It is for research, education, and review workflows.

How does pricing work?

Explore the built-in sample library free, with every tool. Opening your own images needs a subscription. The subscription is paid with PayPal or card and billed when you subscribe: the individual monthly plan is 35.00 USD per month and renews each month until you cancel. Cancel anytime from your account. Use one subscription on up to 2 desktop devices—Windows, macOS, or one of each—at no extra cost. Cloud-powered AI Analysis, shared views, and account-linked slide notes are included too. An individual annual option costs $349.99 USD per year, about two months free, and shared lab plans start at $79 USD per month for up to 5 contributor seats, with tiers up to 30 seats. Every plan also comes as SlideScope Plus, from $50 USD per month: up to 4 devices, 50 images in SlideScope Cloud, and unlimited notes and annotations.

Is it a good histology slide viewer?

Yes, for histology and histopathology research, teaching, and review. Scanned sections open at full resolution, structures measure in calibrated micrometres using the pixel size recorded by the scanner, and annotations stay attached to the slide. Virtual microscopy courses use it because each student runs it locally.

Can it open whole slide imaging from a slide scanner?

Yes. SlideScope opens Aperio SVS, pyramidal TIFF and OME-TIFF, and Hamamatsu NDPI, VMS, and VMU, 3DHISTECH MRXS, Leica SCN, Ventana BIF, Aperio SVSLIDE, Vectra/PerkinElmer QPTIFF, and Agilent ARGOS AVS through the OpenSlide backend. Since version 1.10.0 it also opens Olympus/Evident VSI slides from cellSens, including slides with several scan regions, each measured at its own pixel size, and Hamamatsu NDPIS fluorescence sets, and Leica SCN and Ventana BIF slides that OpenSlide cannot read open as well (BIF tile seams are not stitched yet). It reads the scanner image pyramid, so gigapixel slides open on an ordinary laptop with no image server. MRXS, VMS, and VMU slides open from local storage only, because their pixels live in a companion folder. Since version 1.20.0 it also opens Philips iSyntax and KFBio KFB slides. It does not read SQRAY SDPC, Motic MDSX, or UNIC TMAP.

Is SlideScope image analysis software?

Yes, for the quantification most laboratories actually need. Alongside viewing, calibrated measurement, metadata inspection, and annotation, Local Quantification segments nuclei, cells, or particles on your own computer and reports calibrated counts, density per square millimetre, morphology, per-channel mean intensity, and marker positivity, with CSV, GeoJSON, mask TIFF, and methods-summary exports and folder batch runs. What it does not do is scripted or custom pipelines, so ImageJ or Fiji, CellProfiler, and QuPath remain the right tools for bespoke analysis. Results are for research use and need visual quality control.

Can I compare two slides side by side?

Yes. Open a second slide beside the first and both panes stay on the same part of the tissue at the same magnification, which is the usual way to read an H&E against its IHC restain. Scale is matched in micrometres rather than by zoom factor, so two scans digitised at different resolutions genuinely correspond instead of only appearing to. Panning or zooming either pane moves the other.

Can I export measurements and annotations to QuPath?

Yes. Measurements, notes, and saved regions export as GeoJSON, which QuPath, ASAP, and the Python tooling around them read directly. Coordinates are written at full slide resolution rather than at the zoom level you happened to be viewing, so regions land in the right place. CSV export is also available for measurement tables.

Can I send someone the exact view I am looking at?

Yes. A shared view link carries the slide together with the position, zoom, and plane, so the person you send it to opens the same field of view instead of hunting across a gigapixel scan. Installed copies of SlideScope register a slidescope:// handler and open the link with one click; anyone without the app sees what the link points at on the website first. This is what makes remote review and teaching practical.

Is SlideScope a digital pathology viewer?

Yes. SlideScope is a desktop digital pathology viewer for Windows and macOS: it opens whole slide images from Aperio, Hamamatsu, 3DHISTECH, Leica, Ventana, Akoya, Philips, KFBio, and Olympus/Evident scanners at full resolution, measures in calibrated micrometres, keeps annotations attached to the slide, compares an H&E against its IHC side by side, and exports regions as GeoJSON for QuPath. It is intended for research, education, and review, not for clinical diagnosis.

What is digital pathology?

Digital pathology is the practice of scanning glass slides into whole slide images and then viewing, sharing, annotating, and analysing those images on a computer instead of at a microscope. A scanner produces a gigapixel image pyramid in a vendor format such as SVS, NDPI, or MRXS; a viewer such as SlideScope reads the appropriate resolution levels as you navigate between the overview and areas of interest.

Is there a free version of SlideScope?

Explore the built-in sample library free, with every tool. Opening your own images needs a subscription. There is no free tier for your own images. The subscription is paid with PayPal or card and billed when you subscribe: the individual monthly plan is 35.00 USD per month and renews each month until you cancel. Cancel anytime from your account. If you need a free tool, the comparison pages on this site explain when QuPath, ImageScope, or NDP.view2 is the better fit.

Does SlideScope run on a Mac?

Yes. SlideScope ships native builds for Apple Silicon and Intel Macs on macOS 14 and later, and for Windows 10 and 11. That matters because Aperio ImageScope is Windows-only, so Mac users who receive SVS files usually arrive here looking for an ImageScope alternative for macOS.

What if a file doesn't open or render correctly?

Tell us. Send the file type, the microscope or software that produced it, and what you saw. Our AI support assistant answers right away, 24/7, and a real person on our team reads every conversation and steps in whenever it matters. Unusual files, incorrect rendering, and workflows that don't behave as expected are exactly the reports that help us improve SlideScope, and helpful reports can earn rewards toward your subscription.

From the whole slide to the detail that matters.

Subscription for your own images · PayPal or card · Cancel anytime from your account.